How-to

Last updated on May 19, 2023 1 min read

Short tutorials on genomic and transcriptomic analyses.

Downloading data

download data from SRA

download data from gemma

Aligning RNA-seq

align RNA-seq data

align DNA-seq data

Variant calling

call variants from DNA-seq data

call variants from RNA-seq data

Expression analyses

perform differential gene expression

perform gene set enrichment

build gene co-expression networks

assess gene co-expression networks with EGAD

test for replicability of bulk RNA-seq samples with replicates with AuPairWise

test for replicability of single-cell RNA-seq with MetaNeighbor

allele specific expression analysis

build the gene ontology

Senior Lecturer

My research interests include functional genomics, transcriptomics, X-linked disorders, sex differences in disease, X-inactivation and skewing, and meta-analysis.